An ab initio MO study on fragmentation reaction mechanism of thymine dimer radical cation

Misako Aida, Fukiko Inoue, Motohisa Kaneko, Michel Dupuis

Research output: Contribution to journalArticle

27 Citations (Scopus)

Abstract

Ab initio CASSCF calculations with the 6-31G basis set are reported for the fragmentation reaction of thymine dimer radical cation. The unpaired electron of thymine dimer radical cation is localized on the lengthened C6- C6' bond, and the fragmentation starts with the cleavage of this bond. The puckering of the cyclobutane ring (C6-C6'-C5-C5) leads to one of the C6 atoms being pyramidal and the other being planar in the initial thymine dimer radical cation structure. During the C6-C6' bond breaking step, the pyramidal C6 takes on a sp3 hybridization to accept the localized unpaired electron; the planar C6' takes on a sp2 hybridization with an empty p orbital. In the next step of the fragmentation, the breaking of the C5-C5' bond, the localized unpaired electron on C6 pairs up with one of the electrons formerly of the C5-C5' bond to form a neutral thymine monomer while the other electron of the C5-C5' bond moves to the other ring to form a thymine radical cation. The reaction proceeds stepwise and exothermally. The puckering of the cyclobutane ring of thymine dimer plays an important role in determining the fragmentation path and the spin distribution at the final stacked pair.

Original languageEnglish
Pages (from-to)12274-12279
Number of pages6
JournalJournal of the American Chemical Society
Volume119
Issue number50
DOIs
Publication statusPublished - Dec 17 1997

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Pyrimidine Dimers
Dimers
Cations
Positive ions
Electrons
Cyclobutanes
Thymine
Monomers
Atoms

ASJC Scopus subject areas

  • Chemistry(all)

Cite this

An ab initio MO study on fragmentation reaction mechanism of thymine dimer radical cation. / Aida, Misako; Inoue, Fukiko; Kaneko, Motohisa; Dupuis, Michel.

In: Journal of the American Chemical Society, Vol. 119, No. 50, 17.12.1997, p. 12274-12279.

Research output: Contribution to journalArticle

Aida, Misako ; Inoue, Fukiko ; Kaneko, Motohisa ; Dupuis, Michel. / An ab initio MO study on fragmentation reaction mechanism of thymine dimer radical cation. In: Journal of the American Chemical Society. 1997 ; Vol. 119, No. 50. pp. 12274-12279.
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