DNA origami with double-stranded DNA as a unified scaffold

Yang Yang, Dongran Han, Jeanette Nangreave, Yan Liu, Hao Yan

Research output: Contribution to journalArticle

39 Citations (Scopus)

Abstract

Scaffolded DNA origami is a widely used technology for self-assembling precisely structured nanoscale objects that contain a large number of addressable features. Typical scaffolds are long, single strands of DNA (ssDNA) that are folded into distinct shapes through the action of many, short ssDNA staples that are complementary to several different domains of the scaffold. However, sources of long single-stranded DNA are scarce, limiting the size and complexity of structures that can be assembled. Here we demonstrated that dsDNA (double-stranded DNA) scaffolds can be directly used to fabricate integrated DNA origami structures that incorporate both of the constituent ssDNA molecules. Two basic principles were employed in the design of scaffold folding paths: folding path asymmetry and periodic convergence of the two ssDNA scaffold strands. Asymmetry in the folding path minimizes unwanted complementarity between staples, and incorporating an offset between the folding paths of each ssDNA scaffold strand reduces the number of times that complementary portions of the strands are brought into close proximity with one another, both of which decrease the likelihood of dsDNA scaffold recovery. Meanwhile, the folding paths of the two ssDNA scaffold strands were designed to periodically converge to promote the assembly of a single, unified structure rather than two individual ones. Our results reveal that this basic strategy can be used to reliably assemble integrated DNA nanostructures from dsDNA scaffolds.

Original languageEnglish
Pages (from-to)8209-8215
Number of pages7
JournalACS Nano
Volume6
Issue number9
DOIs
Publication statusPublished - Sep 25 2012

Fingerprint

Scaffolds
DNA
deoxyribonucleic acid
strands
folding
Single-Stranded DNA
asymmetry
Nanostructures
assembling
Complementary DNA
proximity
Recovery
Molecules
assembly
recovery

Keywords

  • DNA nanotechnology
  • DNA origami
  • double-stranded DNA scaffold
  • scaleup
  • self-assembly

ASJC Scopus subject areas

  • Engineering(all)
  • Materials Science(all)
  • Physics and Astronomy(all)

Cite this

DNA origami with double-stranded DNA as a unified scaffold. / Yang, Yang; Han, Dongran; Nangreave, Jeanette; Liu, Yan; Yan, Hao.

In: ACS Nano, Vol. 6, No. 9, 25.09.2012, p. 8209-8215.

Research output: Contribution to journalArticle

Yang, Yang ; Han, Dongran ; Nangreave, Jeanette ; Liu, Yan ; Yan, Hao. / DNA origami with double-stranded DNA as a unified scaffold. In: ACS Nano. 2012 ; Vol. 6, No. 9. pp. 8209-8215.
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