Electronic excitations and spectra in single-stranded DNA

Stefano Tonzani, George C Schatz

Research output: Contribution to journalArticle

56 Citations (Scopus)

Abstract

Using density functional theory and molecular dynamics simulations, we show that delocalized states extending over three bases can be directly excited in single-stranded poly(A) DNA. The results are in semiquantitative agreement with recent experimental results for the delocalization length of these states in single- and double-stranded DNA. The structures used in these molecular dynamics calculations are validated by comparing calculated circular dichroic spectra for d(A)2 and d(A)4 with experiment. These spectra, which arise from highly stacked structures, are in good agreement with experiment, suggesting that the short delocalization in ssDNA arises in spite of strong stacking.

Original languageEnglish
Pages (from-to)7607-7612
Number of pages6
JournalJournal of the American Chemical Society
Volume130
Issue number24
DOIs
Publication statusPublished - Jun 18 2008

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Single-Stranded DNA
Molecular Dynamics Simulation
Molecular dynamics
DNA
Poly A
Density functional theory
Experiments
Computer simulation

ASJC Scopus subject areas

  • Chemistry(all)

Cite this

Electronic excitations and spectra in single-stranded DNA. / Tonzani, Stefano; Schatz, George C.

In: Journal of the American Chemical Society, Vol. 130, No. 24, 18.06.2008, p. 7607-7612.

Research output: Contribution to journalArticle

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