Inverse temperature transition of a biomimetic elastin model

Reactive flux analysis of folding/unfolding and its coupling to solvent dielectric relaxation

Marcel Baer, Eduard Schreiner, Axel Kohlmeyer, Roger Rousseau, Dominik Marx

Research output: Contribution to journalArticle

22 Citations (Scopus)

Abstract

The inverse temperature transition (ITT) of a biomimetic model for elastin, capped GVG(VPGVG) in liquid water, is investigated by a comprehensive classical molecular dynamics study. The temperature dependence of the solvation structure and dynamics of the octapeptide are compared using three common force fields, CHARMM, GROMOS, and OPLS. While these force fields differ in quantitative detail, they all predict this octapeptide to undergo a "folding transition" to closed conformations upon heating and a subsequent "unfolding transition" to open conformations at still higher temperatures, thus reproducing the ITT scenario. The peptide kinetics is analyzed within the reactive flux formalism applied to the largest-amplitude mode extracted from principal component analysis, and the solvent's dielectric fluctuations are obtained from the total water dipole autocorrelations. Most importantly, preliminary evidence for an intimate coupling of peptide folding/unfolding dynamics, and thus the ITT, and dielectric relaxation of bulk water is given, possibly being consistent with a "slave mode" picture.

Original languageEnglish
Pages (from-to)3576-3587
Number of pages12
JournalJournal of Physical Chemistry B
Volume110
Issue number8
DOIs
Publication statusPublished - Mar 2 2006

Fingerprint

elastin
Elastin
Dielectric relaxation
biomimetics
Biomimetics
folding
Superconducting transition temperature
transition temperature
valyl-prolyl-glycyl-valyl-glycine
Fluxes
Peptides
field theory (physics)
peptides
Conformations
Water
water
Solvation
principal components analysis
Autocorrelation
Principal component analysis

ASJC Scopus subject areas

  • Physical and Theoretical Chemistry

Cite this

Inverse temperature transition of a biomimetic elastin model : Reactive flux analysis of folding/unfolding and its coupling to solvent dielectric relaxation. / Baer, Marcel; Schreiner, Eduard; Kohlmeyer, Axel; Rousseau, Roger; Marx, Dominik.

In: Journal of Physical Chemistry B, Vol. 110, No. 8, 02.03.2006, p. 3576-3587.

Research output: Contribution to journalArticle

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