Solution-phase structural characterization of supramolecular assemblies by molecular diffraction

Jodi L. O'Donnell, Xiaobing Zuo, Andrew J. Goshe, Lev Sarkisov, Randall Q. Snurr, Joseph T Hupp, David M. Tiede

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Abstract

Structures of four molecular squares based on rhenium coordination chemistry have been characterized in the solution phase using pair distribution function (PDF) analyses of wide-angle X-ray scattering measured to better than 1 A spatial resolution. In this report we have focused, in particular, on a comparison of structures for pyrazine- and bipyridine-edged squares measured in solution with structures determined for these molecules in the solid state using X-ray crystallography and models derived from geometry optimization and molecular dynamics simulations using a classical force field. The wide-angle scattering for these assemblies is dominated by pair correlations involving one or more rhenium atoms, with both edge and diagonal Re-Re interactions appearing prominently in PDF plots. The pyrazine square is characterized by a relatively rigid structure in solution, with PDF peak positions and linewidths corresponding closely to those calculated from crystal structure data. For the bipyridine-edged square, the experimental PDF peaks measured along the molecular sides match the positions and linewidths of the PDF peaks calculated from static models. In contrast, PDF peaks measured across the diagonal distances of the molecular square deviate significantly from those calculated from the static crystallographic and energy minimized models. The experimental data are instead indicative of configurational broadening of the diagonal distances. In this respect, molecular dynamics simulations point to the importance of butterfly type motions that modulate the Re-Re diagonal distance. Indeed, the experimental data are reasonably well fit by assuming a bimodal distribution of butterfly conformers differing by ∼25° in the Re-Re-Re-Re torsion angle. Additionally, the measurements provide evidence for solvent ordering by the supramolecular assemblies detected as regions of solvent association and exclusion.

Original languageEnglish
Pages (from-to)1578-1585
Number of pages8
JournalJournal of the American Chemical Society
Volume129
Issue number6
DOIs
Publication statusPublished - Feb 14 2007

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Rhenium
Pyrazines
Distribution functions
Butterflies
Diffraction
Molecular Dynamics Simulation
X Ray Crystallography
Molecular Structure
Linewidth
Molecular dynamics
X-Rays
Rigid structures
X ray crystallography
Computer simulation
X ray scattering
Torsional stress
Crystal structure
Association reactions
Scattering
Atoms

ASJC Scopus subject areas

  • Chemistry(all)

Cite this

Solution-phase structural characterization of supramolecular assemblies by molecular diffraction. / O'Donnell, Jodi L.; Zuo, Xiaobing; Goshe, Andrew J.; Sarkisov, Lev; Snurr, Randall Q.; Hupp, Joseph T; Tiede, David M.

In: Journal of the American Chemical Society, Vol. 129, No. 6, 14.02.2007, p. 1578-1585.

Research output: Contribution to journalArticle

O'Donnell, Jodi L. ; Zuo, Xiaobing ; Goshe, Andrew J. ; Sarkisov, Lev ; Snurr, Randall Q. ; Hupp, Joseph T ; Tiede, David M. / Solution-phase structural characterization of supramolecular assemblies by molecular diffraction. In: Journal of the American Chemical Society. 2007 ; Vol. 129, No. 6. pp. 1578-1585.
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