Structure and Dynamics of Electron Injection and Charge Recombination in i-Motif DNA Conjugates

Taiga Fujii, Arun K. Thazhathveetil, Ilyas Yildirim, Ryan M. Young, Michael R Wasielewski, George C Schatz, Frederick D. Lewis

Research output: Contribution to journalArticle

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Abstract

The dynamics of electron injection have been investigated in intramolecular i-motif conjugates possessing stilbenediether (Sd) and perylenediimide (PDI) chromophores separated by either four or six hemiprotonated cytosine C-C base pairs assembled with synthetic loops. Circular dichroism spectra are consistent with the formation of i-motif structures in the absence or presence of Sd and PDI chromophores. The fluorescence of the Sd chromophore is essentially completely quenched by neighboring C-C base pairs, consistent with their function as an electron donor and electron acceptor, respectively. However, the fluorescence of the PDI chromophore is only partially quenched. The dynamics of electron injection from singlet Sd into the i-motif and subsequent charge recombination has been determined by femtosecond transient absorption (fsTA) spectroscopy and compared with the results for electron injection and charge recombination in Sd-linked hairpins possessing cytosine-guanine (C-G) or 5-fluorouracil-adenine (F-A) base pairs. While charge injection is ultrafast (<0.8 ps) for the i-motifs, charge transport across the i-motif C-C base pairs to the PDI electron trap is not observed. The absence of electron transport is related to the structure of the stacked C-C base pairs in the i-motif.

Original languageEnglish
Pages (from-to)8058-8068
Number of pages11
JournalJournal of Physical Chemistry B
Volume121
Issue number34
DOIs
Publication statusPublished - Aug 31 2017

Fingerprint

Electron injection
Chromophores
DNA
deoxyribonucleic acid
injection
Cytosine
chromophores
electrons
Fluorescence
Electron traps
Charge injection
Electrons
Guanine
Dichroism
Adenine
Absorption spectroscopy
Fluorouracil
Charge transfer
fluorescence
guanines

ASJC Scopus subject areas

  • Physical and Theoretical Chemistry
  • Surfaces, Coatings and Films
  • Materials Chemistry

Cite this

Structure and Dynamics of Electron Injection and Charge Recombination in i-Motif DNA Conjugates. / Fujii, Taiga; Thazhathveetil, Arun K.; Yildirim, Ilyas; Young, Ryan M.; Wasielewski, Michael R; Schatz, George C; Lewis, Frederick D.

In: Journal of Physical Chemistry B, Vol. 121, No. 34, 31.08.2017, p. 8058-8068.

Research output: Contribution to journalArticle

Fujii, Taiga ; Thazhathveetil, Arun K. ; Yildirim, Ilyas ; Young, Ryan M. ; Wasielewski, Michael R ; Schatz, George C ; Lewis, Frederick D. / Structure and Dynamics of Electron Injection and Charge Recombination in i-Motif DNA Conjugates. In: Journal of Physical Chemistry B. 2017 ; Vol. 121, No. 34. pp. 8058-8068.
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