What controls the melting properties of DNA-linked gold nanoparticle assemblies?

Rongchao Jin, Guosheng Wu, Zhi Li, Chad A. Mirkin, George C Schatz

Research output: Contribution to journalArticle

866 Citations (Scopus)

Abstract

We report a series of experiments and a theoretical model designed to systematically define and evaluate the relative importance of nanoparticle, oligonucleotide, and environmental variables that contribute to the observed sharp melting transitions associated with DNA-linked nanoparticle structures. These variables include the size of the nanoparticles, the surface density of the oligonucleotides on the nanoparticles, the dielectric constant of the surrounding medium, target concentration, and the position of the nanoparticles with respect to one another within the aggregate. The experimental data may be understood in terms of a thermodynamic model that attributes the sharp melting to a cooperative mechanism that results from two key factors: the presence of multiple DNA linkers between each pair of nanoparticles and a decrease in the melting temperature as DNA strands melt due to a concomitant reduction in local salt concentration. The cooperative melting effect, originating from short-range duplex-to-duplex interactions, is independent of DNA base sequences studied and should be universal for any type of nanostructured probe that is heavily functionalized with oligonucleotides. Understanding the fundamental origins of the melting properties of DNA-linked nanoparticle aggregates (or monolayers) is of paramount importance because these properties directly impact one's ability to formulate high sensitivity and selectivity DNA detection systems and construct materials from these novel nanoparticle materials.

Original languageEnglish
Pages (from-to)1643-1654
Number of pages12
JournalJournal of the American Chemical Society
Volume125
Issue number6
DOIs
Publication statusPublished - Feb 12 2003

Fingerprint

Nucleic Acid Denaturation
Gold
Nanoparticles
Melting
DNA
Freezing
Oligonucleotides
Thermodynamics
Melting point
Monolayers
Permittivity
Theoretical Models
Salts
Temperature

ASJC Scopus subject areas

  • Chemistry(all)

Cite this

What controls the melting properties of DNA-linked gold nanoparticle assemblies? / Jin, Rongchao; Wu, Guosheng; Li, Zhi; Mirkin, Chad A.; Schatz, George C.

In: Journal of the American Chemical Society, Vol. 125, No. 6, 12.02.2003, p. 1643-1654.

Research output: Contribution to journalArticle

Jin, Rongchao ; Wu, Guosheng ; Li, Zhi ; Mirkin, Chad A. ; Schatz, George C. / What controls the melting properties of DNA-linked gold nanoparticle assemblies?. In: Journal of the American Chemical Society. 2003 ; Vol. 125, No. 6. pp. 1643-1654.
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